Data input
Column
BayesTraits Header
Column
Restrictions
Reconstructions / Fossilisations
[1] "No tags or reconstructions set"Priors
Tree
MCMC traces
Column
ML Chain
This plot shows 10,000 random iterations of the Maximum Likelihood chains
Column
ML Chain Density
ML Chain violins
MCMC Diagnostics
Column
Effective Sampling Sizes
Column
Autocorrelation
Rate Estimates
Row
Root State
Root state probabilities for each run
Transition Rates Network
Mean transition rates
Row
Transition Rates Densities
Density distributions of rate transition estimates. Line show mean rates.
Node Reconstructions
[1] "No nodes were set for ancestral state reconstrucitions"Column
Node Reconstruction / Fossilisation
[1] "No nodes were set for ancestral state reconstrucitions"Column
Phylogeny
Acceptance Rates
Mean Acceptance Parameters
Acceptance Parameters Traces
RevJ Model Reduction
Row
Reverse Jump Model Sampling
[1] "No Reverse Jump used"Reverse Jump Model Ranking - Table
[1] "No Reverse Jump used"Reverse Jump Model Ranking - Barchart
[1] "No Reverse Jump used"Row
% Non-zero transitions
[1] "No Reverse Jump used"Three most frequently sampled model
[1] "No Reverse Jump used"Model Comparison - LogBF
Column
Stepping Stone Sampler
Log Marginal Likelihood
Log Bayes Factor
Log Bayes Factor: 329.29
The complex model is a better fit.Column
Stone Power
Stone Marginal Likelihood
Running Marginal Likelihood
